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API Documentation
cyoda
Documentation
pydseamslib.cyoda.readXYZ
pydseamslib.cyoda.readLammpsTrjreduced
pydseamslib.cyoda.readLammpsTrjO
pydseamslib.cyoda.readLammpsTrj
pydseamslib.cyoda.readBonds
pydseamslib.cyoda.atomInSlice
pydseamslib.cyoda.clearNeighbourList
pydseamslib.cyoda.getNewNeighbourListByIndex
pydseamslib.cyoda.halfNeighList
pydseamslib.cyoda.neighbourListByIndex
pydseamslib.cyoda.neighList
pydseamslib.cyoda.neighListO
pydseamslib.cyoda.createBondsFromCages
pydseamslib.cyoda.getHbondDistanceOH
pydseamslib.cyoda.populateHbonds
pydseamslib.cyoda.populateHbondsWithInputClouds
pydseamslib.cyoda.trimBonds
pydseamslib.cyoda.clearGraph
pydseamslib.cyoda.countAllRingsFromIndex
pydseamslib.cyoda.findRings
pydseamslib.cyoda.populateGraphFromIndices
pydseamslib.cyoda.populateGraphFromNListID
pydseamslib.cyoda.removeNonSPrings
pydseamslib.cyoda.restoreEdgesFromIndices
pydseamslib.cyoda.ringNetwork
pydseamslib.cyoda.shortestPath
pydseamslib.cyoda.assignPolygonType
pydseamslib.cyoda.assignPrismType
pydseamslib.cyoda.atomsFromCages
pydseamslib.cyoda.atomsInSingleSlice
pydseamslib.cyoda.averageRMSDatom
pydseamslib.cyoda.basalPrismConditions
pydseamslib.cyoda.buildRefDDC
pydseamslib.cyoda.buildRefHC
pydseamslib.cyoda.clearRingList
pydseamslib.cyoda.clusterCages
pydseamslib.cyoda.commonElementsInThreeRings
pydseamslib.cyoda.compareRings
pydseamslib.cyoda.deformedPrismTypes
pydseamslib.cyoda.discardExtraTetragonBlocks
pydseamslib.cyoda.findPrisms
pydseamslib.cyoda.findsCommonElements
pydseamslib.cyoda.findTripletInRing
pydseamslib.cyoda.getEdgeMoleculesInRings
pydseamslib.cyoda.getPointCloudOneAtomType
pydseamslib.cyoda.getSingleRingSize
pydseamslib.cyoda.getSingleRingSize
pydseamslib.cyoda.hasCommonElements
pydseamslib.cyoda.moleculesInSingleSlice
pydseamslib.cyoda.polygonRingAnalysis
pydseamslib.cyoda.printSliceGetEdgeMoleculesInRings
pydseamslib.cyoda.prismAnalysis
pydseamslib.cyoda.relaxedPrismConditions
pydseamslib.cyoda.rmAxialTranslations
pydseamslib.cyoda.setAtomsWithSameMolID
pydseamslib.cyoda.shapeMatchDDC
pydseamslib.cyoda.shapeMatchHC
pydseamslib.cyoda.topoBulkCriteria
pydseamslib.cyoda.topoUnitMatchingBulk
pydseamslib.cyoda.updateRMSDatom
pydseamslib.cyoda.rdf2Danalysis_AA
pydseamslib.cyoda.bulkPolygonRingAnalysis
pydseamslib.cyoda.clusterAnalysis
pydseamslib.cyoda.getCorrelPlus
pydseamslib.cyoda.getIceTypePlus
pydseamslib.cyoda.writeDump
pydseamslib.cyoda.getq6
pydseamslib.cyoda.reclassifyWater
pydseamslib.cyoda.printIceType
pydseamslib.cyoda.recenterClusterCloud
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