How-to guides

How-to guides are goal-oriented. Use them to solve a specific problem.

Available how-tos

Guide	Description
Install pydseams	pip, pixi, extras, checkout
Classify ASE Atoms	from_ase, to_ase, select, bonding
View a frame in solvis	to_solvis extra
Features and ions	IceFeaturizer, deeptime, PyEMMA, ions
Tools: MDAnalysis, OVITO	IceStates, ice_states, Colab
FAQ	Names, extras, formats
Troubleshooting	Import errors, cells, hydrogens

• Install pydseams
• Classify ASE Atoms
• View a frame in solvis
• Features for kinetic models and ions
• MDAnalysis, OVITO and notebooks
• Frequently asked questions
• Troubleshooting

Structure

Each how-to states the problem, shows the command or snippet, and links to the tutorial or the reference.

Getting help

Tutorials

learn the Frame path

Python surface

live names

Explanation

design