Index

A

available_readers() (in module pydseams.io)

B

bonds_by_index (pydseams.frame.Frame property)

box (pydseams.frame.Frame property)

C

cage_affiliation() (pydseams.frame.Frame method) cages() (pydseams.frame.Frame method) cages_by_signature() (pydseams.frame.Frame method) CageScore (class in pydseams.frame) chill() (pydseams.frame.Frame method) chill_plus() (pydseams.frame.Frame method)

classify_chill() (pydseams.frame.Frame method) classify_chill_plus() (pydseams.frame.Frame method) classify_templates() (pydseams.frame.Frame method) classify_topology() (pydseams.frame.Frame method) cn() (pydseams.frame.Frame method) ContactPairs (class in pydseams.frame)

D

ddc (pydseams.frame.CageScore attribute) density() (pydseams.frame.Frame method)

DensityProfile (class in pydseams.frame) domain() (pydseams.frame.Frame method) DomainStats (class in pydseams.frame)

F

find_prisms() (pydseams.frame.Frame method) fingerprint() (pydseams.frame.Frame method) fit_classifier() (pydseams.frame.Frame method) Frame (class in pydseams.frame) frame_from_ase() (in module pydseams.aseio) frame_to_ase() (in module pydseams.aseio) from_arrays() (in module pydseams) (pydseams.frame.Frame class method)

from_ase() (in module pydseams) (pydseams.frame.Frame class method) from_chemfiles() (in module pydseams) (pydseams.frame.Frame class method) from_con() (in module pydseams) (pydseams.frame.Frame class method) from_file() (pydseams.frame.Frame class method) from_xyz() (in module pydseams) (pydseams.frame.Frame class method)

G

guest_occupancy() (pydseams.frame.Frame method)

H

hbonds (pydseams.frame.Frame property) hbonds_from_donors() (pydseams.frame.Frame method)

hc (pydseams.frame.CageScore attribute) hydration_shell_rings() (pydseams.frame.Frame method)

I

IceCounts (class in pydseams.frame)

ion_cloud() (pydseams.frame.Frame method) ion_environment() (pydseams.frame.Frame method)

L

load_frame() (pydseams.frame.Frame method)

M

module pydseams pydseams.aseio pydseams.frame pydseams.io pydseams.solvis pydseams.yoda

monolayer_rings() (pydseams.frame.Frame method)

N

n_atoms (pydseams.frame.Frame property) n_ic (pydseams.frame.CageScore property)

n_ih (pydseams.frame.CageScore property) n_water (pydseams.frame.CageScore property) neighbor_list (pydseams.frame.Frame property)

P

pairs() (pydseams.frame.Frame method) positions (pydseams.frame.Frame property) predict_class() (pydseams.frame.Frame method) pydseams module pydseams.aseio module

pydseams.frame module pydseams.io module pydseams.solvis module pydseams.yoda module

R

rdf() (pydseams.frame.Frame method) rdf_2d() (pydseams.frame.Frame method) read() (in module pydseams.io)

rings (pydseams.frame.Frame property) rings_recomputed_sources (pydseams.frame.Frame property) running_cn() (pydseams.frame.Frame method)

S

seeded_affiliation() (pydseams.frame.Frame method) soap() (pydseams.frame.Frame method)

steinhardt() (pydseams.frame.Frame method) steinhardt_voronoi() (pydseams.frame.Frame method)

T

to_ase() (pydseams.frame.Frame method) to_solvis() (in module pydseams) (in module pydseams.solvis) (pydseams.frame.Frame method)

topology_library() (pydseams.frame.Frame method) Trajectory (in module pydseams)

V

voronoi_features() (pydseams.frame.Frame method)