Index A | B | C | D | F | G | H | M | N | P | R | S | T | U | W A assignPolygonType() (in module pydseamslib.cyoda) assignPrismType() (in module pydseamslib.cyoda) atomInSlice() (in module pydseamslib.cyoda) atomsFromCages() (in module pydseamslib.cyoda) atomsInSingleSlice() (in module pydseamslib.cyoda) averageRMSDatom() (in module pydseamslib.cyoda) B basalPrismConditions() (in module pydseamslib.cyoda) buildRefDDC() (in module pydseamslib.cyoda) buildRefHC() (in module pydseamslib.cyoda) bulkPolygonRingAnalysis() (in module pydseamslib.cyoda) C clearGraph() (in module pydseamslib.cyoda) clearNeighbourList() (in module pydseamslib.cyoda) clearRingList() (in module pydseamslib.cyoda) clusterAnalysis() (in module pydseamslib.cyoda) clusterCages() (in module pydseamslib.cyoda) commonElementsInThreeRings() (in module pydseamslib.cyoda) compareRings() (in module pydseamslib.cyoda) countAllRingsFromIndex() (in module pydseamslib.cyoda) createBondsFromCages() (in module pydseamslib.cyoda) D deformedPrismTypes() (in module pydseamslib.cyoda) discardExtraTetragonBlocks() (in module pydseamslib.cyoda) F findPrisms() (in module pydseamslib.cyoda) findRings() (in module pydseamslib.cyoda) findsCommonElements() (in module pydseamslib.cyoda) findTripletInRing() (in module pydseamslib.cyoda) G getCorrelPlus() (in module pydseamslib.cyoda) getEdgeMoleculesInRings() (in module pydseamslib.cyoda) getHbondDistanceOH() (in module pydseamslib.cyoda) getIceTypePlus() (in module pydseamslib.cyoda) getNewNeighbourListByIndex() (in module pydseamslib.cyoda) getPointCloudOneAtomType() (in module pydseamslib.cyoda) getq6() (in module pydseamslib.cyoda) getSingleRingSize() (in module pydseamslib.cyoda) H halfNeighList() (in module pydseamslib.cyoda) hasCommonElements() (in module pydseamslib.cyoda) M module pydseamslib.cyoda moleculesInSingleSlice() (in module pydseamslib.cyoda) N neighbourListByIndex() (in module pydseamslib.cyoda) neighList() (in module pydseamslib.cyoda) neighListO() (in module pydseamslib.cyoda) P polygonRingAnalysis() (in module pydseamslib.cyoda) populateGraphFromIndices() (in module pydseamslib.cyoda) populateGraphFromNListID() (in module pydseamslib.cyoda) populateHbonds() (in module pydseamslib.cyoda) populateHbondsWithInputClouds() (in module pydseamslib.cyoda) printIceType() (in module pydseamslib.cyoda) printSliceGetEdgeMoleculesInRings() (in module pydseamslib.cyoda) prismAnalysis() (in module pydseamslib.cyoda) pydseamslib.cyoda module R rdf2Danalysis_AA() (in module pydseamslib.cyoda) readBonds() (in module pydseamslib.cyoda) readLammpsTrj() (in module pydseamslib.cyoda) readLammpsTrjO() (in module pydseamslib.cyoda) readLammpsTrjreduced() (in module pydseamslib.cyoda) readXYZ() (in module pydseamslib.cyoda) recenterClusterCloud() (in module pydseamslib.cyoda) reclassifyWater() (in module pydseamslib.cyoda) relaxedPrismConditions() (in module pydseamslib.cyoda) removeNonSPrings() (in module pydseamslib.cyoda) restoreEdgesFromIndices() (in module pydseamslib.cyoda) ringNetwork() (in module pydseamslib.cyoda) rmAxialTranslations() (in module pydseamslib.cyoda) S setAtomsWithSameMolID() (in module pydseamslib.cyoda) shapeMatchDDC() (in module pydseamslib.cyoda) shapeMatchHC() (in module pydseamslib.cyoda) shortestPath() (in module pydseamslib.cyoda) T topoBulkCriteria() (in module pydseamslib.cyoda) topoUnitMatchingBulk() (in module pydseamslib.cyoda) trimBonds() (in module pydseamslib.cyoda) U updateRMSDatom() (in module pydseamslib.cyoda) W writeDump() (in module pydseamslib.cyoda)
